Download Loupe V(D)J Browser

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New and improved user interface for rapid filtering and exploration of V(D)J datasets!
Supports BEAM (Antigen Capture) data analysis with new visualization and filtering tools to explore the relationships between clonotypes and antigens. Immune cell clonotypes can now be visualized through the Clonotype Distribution Plot.
Updated Sequence view for improved visualization of paired BCR or TCR receptor chains.
Enables visualization of receptor nucleotide sequence for variants within a clonotype and their associated antigen specificity score.
v5.0.1 fixes critical bug to display the correct consensus sequence under the “Align Contigs to Consensus and Reference” option.

Download for Windows
File size: 66.998 MB
md5sum: 5d743000291448fba38ccbfa5cdef57a
Download for MacOS
File size: 123 MB
md5sum: a626aacd17e423bbaae91536fd0315b5

Download is unavailable on mobile devices.

Loupe V(D)J Browser 4.0 is required to view `.vloupe` files produced by Cell Ranger 5.0+
Enables comparison of aggregated samples, including subsetting of the dataset in a single view
Import `.cloupe` file to filter data by gene expression based clustering
Introduction of filtering for invariant natural killer T (iNKT) cells and mucosal-associated invariant T (MAIT) cells
Improved performance on larger datasets

Download is unavailable on mobile devices.

Loupe V(D)J Browser 3.0 is required to view .vloupe files produced by Cell Ranger 3.0+
Comparison mode enables investigation of clonotypes and gene usage across multiple experiments
Improved functionality for exploring B cells